Archive for the 'Science' Category

Writing and rewards: an author marches on his stomach

Tuesday, March 3rd, 2009

The thing about writing a book is — pardon the obviousness — you have to write a whole lot of words.

Now, plenty of bloggers do lots of writing, over a period of six months or a year they might easily reach the 80-100,000 word sum of a typical book. There are two big differences for the author of a book: First, you’ve got to write according to a plan, so that the little bricks of words you are piling up form something coherent and shapely, whereas bloggers win a free pass to be discursive each time they hit “post.” Second, bloggers’ work is fueled by a daily reward of feedback and reaction to their posts, whether it’s an onslaught of comments or just a small jump on the site-traffic meter. Authors don’t get that. That is why, so often, we devise systems of our own — tracking systems to help keep ourselves on plan, to know whether we’re ahead or behind, and personal reward mechanisms, to provide incentives across arduous weeks and months.

My tracking system is simple: a small spreadsheet with word-count quotas and tallies. I don’t really need to do this, but the ritual of recording each day’s verbal production keeps me moving. The reward mechanism is even simpler.

I have a taste for red licorice. I grew up loving an odd Danish confection called Broadway Licorice Rolls — you got four little rolls of tape-like shapes in a plastic foil wrapping from the candy-store counter. Far as I can tell, they no longer exist. (A brand called Delfa Rolls was distributed online until recently, but is now marked discontinued.) Haribo red licorice wheelsThe closest substitute I have found is Haribo red licorice wheels. I buy them in bulk and dump a big bag in a candy jar in my office. When I’m writing a book, each day after I’ve drafted my target amount of prose — usually 1000 words, sometimes more if I’m behind — I mark the occasion with one or two of these fragrant corn-syrup-solid bonbons.

Now, I know what you’re thinking; or rather, I know there are two groups of you out there. One group is snorting with derision at this crude methodology — self-doping with sugar! All I can say to them is, you do whatever it takes to get the job done. The other bunch is thinking, “How do you avoid stuffing your face every time you hit a rough spot?” All I can say to them is, that would feel like cheating at solitaire. Maybe I scored when they passed out the genes for delayed gratification.

On yesterday’s Fresh Air the science writer Jonah Lehrer was describing a bit of brain research that he discusses in his new book How We Decide. Test subjects divided into two groups were asked to memorize numbers. One group was assigned two digit numbers, the other seven digit figures. Then the members of each group were offered a choice between some sort of gooey, fatty dessert and an austere fruit salad. Of course the seven-digit crew opted much more heavily for the junk food than the double-digit gang.

This result, according to Lehrer, displayed how easily the prefrontal cortex can be overtaxed. The task of remembering the longer numbers had impaired the subjects’ long-term decision-making capacity — the part of their brains that would say, “Don’t eat that crud, it’s bad for you.”

Maybe so. Lehrer has read the study and I haven’t. I only know that as I heard him describe the experiment, and before he offered his interpretation, I sat there and thought: of course the seven-digit people went for the sugar. They’d been asked to do something hard! Now they were rewarding themselves.

Mind-changing thoughts for the new year

Monday, January 7th, 2008

Every year around this time John Brockman poses some Big Question to his Edge discussion group, a salon of scientists and intellectuals. The results are typically all over the map but you can almost always find something of value and/or use. This year’s question was “What have you changed your mind about?” Here are some nuggets I excavated from the sprawling pile:

BoingBoing’s Xeni Jardin writes about how online communities need tending, describing BoingBoing’s experience with managing its comment space (the site hired Making Light’s Teresa Nielsen Hayden to moderate). Her conclusion is that online discussions are best moderated by human hosts rather than voting systems or algorithms:

Plucking one early weed from a bed of germinating seeds changes everything. Small actions by focused participants change the tone of the whole. It is possible to maintain big healthy gardens online. The solution isn’t cheap, or easy, or hands-free. Few things of value are.

This isn’t exactly news; the gardening metaphor as applied to online conversation has a long history stretching back to the early days of the Well (and probably Usenet as well) and extending more recently into communities like Flickr and Wikipedia. But each new generation of online services needs to learn this lesson through experience; BoingBoing has managed it well.

Linda Stone writes insightfully, as always, about attention — and how we habitually hold our breath as we answer email (I tried observing myself and, yes, it’s true!):

I believe that attention is the most powerful tool of the human spirit and that we can enhance or augment our attention with practices like meditation and exercise, diffuse it with technologies like email and Blackberries, or alter it with pharmaceuticals.

But lately I have observed that the way in which many of us interact with our personal technologies makes it impossible to use this extraordinary tool of attention to our advantage.

In observing others — in their offices, their homes, at cafes — the vast majority of people hold their breath especially when they first begin responding to email. On cell phones, especially when talking and walking, people tend to hyper-ventilate or over-breathe.

The rest is here.

Nick Carr — echoing ideas in his new book, The Big Switch, which I’m reading now — jumps off from a line by Chinese leader Hu Jintao to argue that the Net is becoming more centralized:

It’s not Hu Jintao who is deluded in believing that the net might serve as a powerful tool for central control. It is those who assume otherwise. I used to count myself among them. But I’ve changed my mind.

Kai Krause, who created software tools for designers that were hugely popular a decade or so ago, writes about the frustrating ephemerality of creativity in the software field.

Noting that “hardly any of my software even still runs at all,” he writes:

I used to think “Software Design” is an art form.

I now believe that I was half-right:
it is indeed an art, but it has a rather short half-life:
Software is merely a performance art!

A momentary flash of brilliance, doomed to be overtaken by the next wave, or maybe even by its own sequel. Eaten alive by its successors. And time…

Finally, Alison Gopnik, the psychologist and coauthor of The Scientist in the Crib, writes about the purpose of imaginative play:

Learning about the real world has obvious evolutionary advantages and kids do it better than anyone else. But why spend so much time thinking about wildly, flagrantly unreal worlds? The mystery about pretend play is connected to a mystery about adult humans – especially vivid for an English professor’s daughter like me. Why do we love obviously false plays and novels and movies?

…In fact, I think now that the two abilities — finding the truth about the world and creating new worlds — are two sides of the same coins. Theories, in science or childhood, don’t just tell us what’s true — they tell us what’s possible, and they tell us how to get to those possibilities from where we are now. When children learn and when they pretend they use their knowledge of the world to create new possibilities. So do we whether we are doing science or writing novels. I don’t think anymore that Science and Fiction are just both Good Things that complement each other. I think they are, quite literally, the same thing.

A fine insight — one that generations of readers of science fiction and fantasy know in their bones already.

Moore’s Law, once more with feeling

Monday, September 24th, 2007

Jeff Jarvis reminds us that Moore’s Law is not: “Chips double in speed every 18 months.” Gordon Moore first predicted that the power of microprocessors (as measured by the number of transistors you could cram into a particular space on a chip) would double once every year; later he revised it to once every two years. Somehow — most likely, thanks to careless popular journalism — in the popular imagination this has become set in stone as an every-18-month prediction about chip speed.

Jeff asks:

So I raise again the question of how we can better map content and corrections. How does Moore assure there is a definitive statement of his law? How do we know it comes from him? Once it’s acknowledged as correct, how do we notify those who got it wrong so the can correct it and start spreading the right meme? Truth is a game of wack-a-mole.

I’ve been playing that game for a decade. Here’s a Salon column from October 1997 that addresses it. Here’s a post from just this past spring.
Here’s two pointers for good reference information on Moore’s Law: one from Greg Papadopoulos at Sun and the other from ExtremeTech.

If we all keep repeatedly linking to the good information maybe we can demonstrate that Gresham’s Law does not apply to information, and that good info can drive out bad.

But, you know, I won’t hold my breath.

Jaron Lanier’s surface-embracing vision

Monday, July 2nd, 2007

Near the end of Dreaming in Code I took a chapter to look at some of the more visionary efforts today to reform the troubled world of software development. One key portrait was of Jaron Lanier. (It was a delightful coincidence that, well after I’d settled on my book title, I discovered that Lanier had once told an interviewer, “I used to dream in code at night when I was in the middle of some big project.”)

This month in his column in Discover, Lanier uses my book as a jumping off point to discuss some of the same questions I set out with:

Why do some software projects sail to completion while so many others seem cursed? Why must software development be so difficult to plan?

These questions should concern everyone interested in science, not just programmers, because computer code is increasingly the language we use to describe and explore the dynamic aspects of reality that are too complicated to solve with equations. A comprehensive model of a biological cell, for instance, could lead to major new insights in biology and drug design. But how will we ever make such a model if the engineering of a straightforward thing like a personal productivity package confounds us?

In the heart of the piece, Lanier explains, more fully, his big idea — “phenotropics”: a software system, inspired by biology and robotics, in which surfaces “read” each other using fuzzy pattern recognition, allowing for systems that are better able to handle small variations from the norm without crashing.

Suppose software could be made of modules that were responsible for identifying each other with pattern recognition. Then, perhaps, you could build a large software system that wouldn’t be vulnerable to endless unpredictable logic errors.

He mentions Web 2.0-style mashups as one fledgling step in this direction, and also provides an anecdotal account of a project from the 1980s that he collaborated on with Andy Hertzfeld (another central figure in Dreaming in Code) called Embrace.

It’s a mind-expanding read, like so much of Jaron’s stuff. Embrace surfaces! Find patterns!

Robots are hard, too

Sunday, March 18th, 2007

Friday’s Wall Street Journal included a book review of Almost Human: Making Robots Think,a new book by Lee Gutkind that’s a portrait of the work at Carnegie Mellon’s Robotics Institute.

That work, it seems, has its frustrations, and — as the reviewer, George Anders, tells it — the difficulties sound eerily like those recounted in Dreaming in Code’s description of the things that make software hard:

Mr. Gutkind’s second big insight involves Carnegie-Mellon’s approach to project management. It’s awful. Goals aren’t defined. Interim deadlines aren’t met. Crucial subsystems turn out to be incompatible. People rely on all-nighters to get everything finished. Such bad habits invite catastrophic blunders by exhausted people whose last-minute “fixes” snarl everything else.

In the most maddening breakdown of all, the scientists devising research projects seldom communicate well with the engineers trying to build them. Even the word “target” becomes a sore spot. To scientists, it means their working hypothesis. To engineers, it means the robot’s physical destination. Unaware of this gap, supposed colleagues get mired in confusing conversations.

Gutkind’s book is now on my “must read” list. One final irony to me, coming out of Dreaming in Code, is that Carnegie Mellon is not only home to Gutkind’s roboticists; it also harbors the Software Engineering Institute, which is ground zero for the CMM, CMMI, TSP and other acronymic attempts to add a framework of engineering rigor around the maddeningly difficult enterprise of producing new software. I might be jumping the gun (not having read Gutkind’s book yet), but it sounds like those roboticists and the SEI people should have lunch some time.

Denise Caruso’s “Intervention”: What we don’t know can hurt us

Sunday, March 11th, 2007

Biotech is not a field I’ve immersed myself in, and I have been — like, perhaps, many of you — content to place a simple boundary on my worries about its impact, on the assumption that smart and dedicated people were already deeply engaged in assessing and managing the risks we are taking in that area.

Then I read Denise Caruso’s eye-opening new book, Intervention, and realized that such complacency is a very bad bet. Intervention is a passionately argued, carefully documented critique of our society’s narrow approach to defining, and dismissing, the potential risks of biotech products.

I worked with Caruso many years ago at the San Francisco Examiner, and since then have followed her career as a technology pundit and more recently a nonprofit think-tank founder with admiration, mostly from afar. When I heard that she’d self-published her book after a publishing-house deal fell through, I set up an interview with her. It’s now live on Salon. Here’s a brief excerpt:

You spent years writing about the technology industry. How did this book come about?

It was sheerly out of reaction to meeting [molecular biologist] Roger Brent. He laughs when I say this, and I say it with all the love in my heart, but he’s one of the most macho scientists I’ve ever met in my life. His lineage — in academics, that means who your Ph.D. advisor was — is a guy named Mark Ptashne, whose Ph.D. advisor was James Watson. When I met Roger, his attitude was: What’s a nice girl like you doing being afraid of eating genetically modified food? Don’t you know that you could eat 10 kilos of Bt potatoes [Bacillus thuringiensis is used to modify crops transgenically for insect resistance], and nothing would happen to you?

I didn’t know that much about biology. But when he said that, I said, “I don’t think you actually know that to be true. I don’t know how you could know that to be true.” And we went back and forth on it, and he finally conceded — which I was really surprised about. He said, “So how do we protect the public, but not stop science from progressing at the same time?”

Miscellany: Of drapes and atheism

Wednesday, November 15th, 2006

I’ve been hit with the accursed virus that’s going around — not a computer bug; the sniffly, rhinovirus sort. Meanwhile, I’m working my way through Don Knuth’s “Structured Programming with go to Statements”; the Code Reads for that should be up within a day or two.

In the political world, I keep returning to the condescending fuss the GOP made before the election about Nancy Pelosi having already begun to choose her new drapes. President Bush followed up with more in his “we took a thumpin’” press conference.

And all I can think is, drapes? This election was all about pulling back drapes. Bush’s Washington has been a place of closed curtains and shut doors — from the Cheney energy panel to the secret rendition of prisoners to the zipped-up treatment of the press. Pelosi could mint some appropriate symbolism by simply leaving her windows uncovered. Whether she does so or not, let’s hope for a little more sunshine on the workings of government now that we’re no longer a one-party state.

If politics is too mundane and Iraq too depressing, go read Gary Wolf’s wonderful Wired essay on atheism. It’s a great tour of the subject with stops at the doors of Richard Dawkins, Sam Harris and Daniel Dennett. Wolf concludes that, although atheism is the logical and philosophically sound stance for a scientific person, there’s something off-puttingly evangelical about its most fervent advocates, and that’s why the great bulk of us non-believers tend to identify as agnostics instead.

Stem cells: Bush’s shameful first veto?

Wednesday, July 19th, 2006

President Bush appears poised for the first veto of his presidency. The cause that has finally pushed him to reject Congressional legislation? An attempt to expand funding for stem cell research that Bush hobbled back in 2001.

For millions of Americans, the potential fruits of stem cell research — in the form of cures to dangerous diseases — are a serious matter with grave personal import. For President Bush, the issue has always served as a political football.

On the one hand, Bush argues that the destruction of human embryos (microscopic organisms made up of a few cells) is a kind of killing. His press spokesman, Tony Snow, adopting the supercharged cant of anti-abortion activists, referred to it recently as “murder.” In order to stop such “murder,” Bush agreed in 2001 to limit all federal funding of stem cell research to a handful of pre-existing “lines” of cells — cells that had been created specifically for research. His argument was, let’s not use tax dollars to pay for the destruction of more embryos for the sake of research.

Here is why Bush’s position is a joke: Thousands and thousands of embryos are destroyed every year in fertility clinics. They are created in petri dishes as part of fertility treatments like IVF; then they are discarded.

If Bush and his administration truly believe that destroying an embryo is a kind of murder, they shouldn’t be wasting their time arguing about research funding: They should immediately shut down every fertility clinic in the country, arrest the doctors and staff who operate them, and charge all the wannabe parents who have been wantonly slaughtering legions of the unborn.

But of course they’ll never do such a thing. (Nor, to be absolutely clear, do I think they should.) Bush could not care less about this issue except as far as it helps burnish his pro-life credentials among his “base.” This has been true since the first airing of Bush’s position in 2001, as I said back then. So he finds a purely symbolic way of taking a stand, but won’t follow the logic of his position to the place where it might cause him any political harm — as opposing the family-building dreams of millions of middle-class Americans would doubtless do.

(And please don’t test our credulity with the laughable “Go ahead and do the research, but let’s not spend taxpayers’ money on things they don’t believe in” argument: If that had any bearing, my tax dollars would not be funding a war that 2/3 of the country opposes now that the specious arguments used to launch it have collapsed.)

If Bush believes destroying embryos is murder, let him take a real stand against it. If he doesn’t, he shouldn’t make it harder for the thousands of embryos that are being discarded anyway to be used for a valuable purpose that could improve real lives.

That’s why Bush’s stem cell position isn’t Solomonic — it’s craven. His upcoming veto is an act not of moral leadership but of hypocrisy. And the cost of this hypocrisy, assuming Congress can’t muster the votes for an override, will be borne by everyone who dreams of new cures for awful illnesses.

Here come the blind commissioners

Monday, August 29th, 2005

There’s a colossal farce taking place over at the FDA. A group of commissioners there, faced with unimpeachable evidence of the reasonably safety of the emergency contraceptive known as Plan B, are desperate to find a rationale for delaying yet again a decision on approving the drug for over-the-counter sales. They’ve come up with a remarkable dodge.

We’d approve the drug for grownups, say the hapless commissioners, but we want to require women under 17 to get a prescription. And how could we possibly enforce that? “We cannot have an inspector in every pharmacy,” complains FDA Commissioner Lester Crawford. So let’s keep the drug, which has awaited approval for two years, away from everyone for a good while longer.

And yet…

Strangely, the government has not banned the sale of gin and rum to adults because it lacks the manpower to supply every corner store with a full-time ID checker. We do not despair of enforcing the age limit on driving, even though the government has yet to put a G-man in every back seat, demanding a birth certificate before you can turn the ignition. Homeland Security does not dispatch squadrons of troopers to every movie theater to enforce the R rating. Yet somehow, we muddle through.

Is it possible that our FDA commissioners have something else on their mind besides the welfare of those 15- and 16-year old girls? Is there a constituency to be placated? Are there evangelicals to be appeased?

Or, perhaps, do the legions of anti-abortion activists sense that a safe and easily obtainable emergency contraceptive pill could do far more to reduce the number of abortions in the U.S. than their own protests could ever accomplish — and hate the idea of losing that fire-up-the-base issue?

Inelegant design

Tuesday, August 23rd, 2005

I had thought there was no way to top The Onion’s brilliant parody of Intelligent Design — “Evangelical Scientists Refute Gravity With New ‘Intelligent Falling’ Theory.” But the Web’s hive brain has now done it, with the rise of the Flying Spaghetti Monster meme.

This “Open Letter to Kansas School Board” appears to be the source-point of the new cult of Pastafarianism (Wikipedia has more):

 

Let us remember that there are multiple theories of Intelligent Design. I and many others around the world are of the strong belief that the universe was created by a Flying Spaghetti Monster. It was He who created all that we see and all that we feel. We feel strongly that the overwhelming scientific evidence pointing towards evolutionary processes is nothing but a coincidence, put in place by Him.

It is for this reason that I’m writing you today, to formally request that this alternative theory be taught in your schools, along with the other two theories. In fact, I will go so far as to say, if you do not agree to do this, we will be forced to proceed with legal action. I’m sure you see where we are coming from. If the Intelligent Design theory is not based on faith, but instead another scientific theory, as is claimed, then you must also allow our theory to be taught, as it is also based on science, not on faith.

Darwin/Fish bumper-sticker designs on the Flying Spaghetti Monster theme are proliferating at an alarming rate over on BoingBoing.